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Which genes does P. gingivalis need to grow?
A near-saturating Tn-seq screen finds ~463 (~22%) P. gingivalis genes putatively essential on blood agar.
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How many P. gingivalis genes were putatively essential in vitro?
463 genes (22.0%).
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What organism was screened?
Porphyromonas gingivalis, an oral Gram-negative anaerobe.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What library design defined essentials?
A near-saturating insertion library in ATCC 33277.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What fraction of essentials match known essential homologues?
78.6% (364 genes).
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
Why is P. gingivalis called a keystone pathogen?
Its interactions with other bacteria and the host are critical for periodontitis.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What genetic method was used?
Tn-seq with a Mariner mini-transposon and Illumina sequencing.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What growth phenotype defined essentials?
Genes essential for growth on blood agar.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What insertion-ratio rule called essentials?
≥50-fold under-insertion vs theoretical (actual:theoretical ≤0.020).
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What about essentials without DEG homologues?
~21.4% may be species- or niche-specific essentials.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
Why is a quantitative mutant library useful?
It enables screens under many selective pressures for survival genes.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified
What advance do authors emphasize?
Availability of a P. gingivalis mutant library plus quantitative screening.
Source: Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis · DOI · quote verified