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Do SNPs prove exonic splicing enhancers are real?
Human polymorphism patterns validate computationally predicted ESEs and show splicing constrains exon evolution.
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What are ESEs?
Short oligonucleotide sequences that enhance exon recognition by the splicing machinery.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
What evolutionary implication do SNP patterns support?
Splicing imposes important constraints on human exon evolution.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Which computational resource predicts ESEs here?
RESCUE-ESE.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Where is conservation/selection signal stronger?
Increasing proximity to splice sites.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
What SNP features help find splicing-altering variants?
Proximity to splice sites and ESE disruption/alteration.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Why use SNPs for validation?
Common variation reflects selective pressures on functional motifs.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Biological process constrained?
Pre-mRNA splicing / exon recognition.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Have allele-specific splicing differences been reported?
Yes—prior reports motivate searching for ESE-disrupting SNPs.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Teaching point?
Population genetics can validate regulatory motifs like ESEs.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
Organism/genome?
Human exons / genomic sequences.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified
What do ESEs often act through?
SR proteins that bind ESEs and recruit splicing machinery.
Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified