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Do SNPs prove exonic splicing enhancers are real?

Human polymorphism patterns validate computationally predicted ESEs and show splicing constrains exon evolution.

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What are ESEs?

Short oligonucleotide sequences that enhance exon recognition by the splicing machinery.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

What evolutionary implication do SNP patterns support?

Splicing imposes important constraints on human exon evolution.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Which computational resource predicts ESEs here?

RESCUE-ESE.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Where is conservation/selection signal stronger?

Increasing proximity to splice sites.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

What SNP features help find splicing-altering variants?

Proximity to splice sites and ESE disruption/alteration.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Why use SNPs for validation?

Common variation reflects selective pressures on functional motifs.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Biological process constrained?

Pre-mRNA splicing / exon recognition.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Have allele-specific splicing differences been reported?

Yes—prior reports motivate searching for ESE-disrupting SNPs.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Teaching point?

Population genetics can validate regulatory motifs like ESEs.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

Organism/genome?

Human exons / genomic sequences.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified

What do ESEs often act through?

SR proteins that bind ESEs and recruit splicing machinery.

Source: Single nucleotide polymorphism-based validation of exonic splicing enhancers · DOI · quote verified